neuropoly / spinalcordtoolbox / 12104 / 2
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coverage: 66.856% (-0.06%) from 66.919%
12104.2

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jcohenadad 
Added an option for keypoints transformation (#2533)

* First implementation of a -label option that specify certain operation to perform because the input file contains point like label. It seems fonctionnal but is still a work in progress. The transformed file overwrite the first created one. the option is here activated by default but an accepted argument

* forget to change a parameter. which causes it to not label every points. removing extra lines as well

* refactoring with precisting sct function. everything look smooth. open question about where to save the actual straight file before using cubic to points.

* force the nearest neighbors interpolation when using the -label flag.

* added creation of tmp folder to stor dilated and straighten dilated image (before applying cubic to point)

* Added the removal of temporary files (if not stated otherwise)

* removing lines. PEP-8 normalization

* remove extra lines

* refactor parser. the -label flag does not need any argument and activate the dilatation and nearest neighbors interpolation.

* PEP-8 formatting

* remove duplicated code

* put -label flag as an interpolation option.

* changing help discription for -x flag

* removing extra lines

* rmoving extra line and defining label in the case that the flag is not used.

* sct_apply_transfo: Updated usage

* sct_apply_transfo: Minor refactoring

- Added verbose
- Added ImplementationError for dim=4 case

9293 of 13900 relevant lines covered (66.86%)

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Source Files on job 12104.2