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1314.2

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cavestruz 
Issue/189/autocompile notebooks (#195)

* Renamed example notebooks for consistency

* Renamed pipeline example to be more descriptive

* Removed statically compiled notebooks from repo

* Sphinx settings cleanup and additional configuration. Testing that this runs ont ravis

* Added nbexamples module to travis to compile examples

* I tested that commenting out a bunch of crap didnt crash it. It doesnt, removing these irrelevant lines

* Changed docs to compiled index.html and automatically build table of contents

* Added the compiled notebooks to the table of contents and the code that executes them.

* Split .gitignore contents into documentation specific cases and not.

* Moved list of modules to apidoc and examples into a configuration file. The main file to build the docs should not need to be touched to add a new file now.

* Removed the sphinx extension I was testing before and added pandoc, required for nbconvert.

* Another dependency

* Updated instructions on how to add your new module or example notebook to the online documentation

* apt-get for pandoc

* Resolve the Pygments ipython3 error in docs

* I will get all the dependencies eventually...

* Now the readthedocs dependencies hahahahahahaha.........

* Small edits to the titles and some of the markdown cells to resolve conversion bugs

* Add jupyter to rtd req

* Added a config file for rtd and standardized requirements file nane

* try again

* testing this

* test again

* Will it work...

* maybe now

* what baout now

* typ

* Everything now executes and converts locally

* travis requirements

* test

* maybe order matters if i set the kernel first

* start pruning things i am pip installing

* test again with a prune

* Finalized travis config file

* first pass at conda env

* Missed one

* Removed something i shouldnt have

* hopefully teh last dependency

* python kernel, popcorn...also kernel. i ... (continued)

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