2
93%
master: 93%

Ran 29 Oct 2019 12:52PM UTC

Files 30

Run time 3s

Badge

Embed ▾

Committed 29 Oct 2019 12:13PM UTC coverage: 93.4% (-0.004%) from 93.404%

Job # TRAVIS_BUILD_TYPE=Coverage

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

add option to trim uncalled alleles (#193)

With genotype revision on, it's possible for an allele to be included in the pVCF site but not actually called in any of the final sample GT genotypes. This is rare and mainly associated with low/marginal quality alleles.

The new command-line option --trim-uncalled-alleles, -a (genotyper_config::trim_uncalled_alleles) adds a postprocessing step to remove such "uncalled" alleles (by invoking htslib's bcf_trim_alleles subroutine).

closes #191

Run Details

4302 of 4606 relevant lines covered (93.4%)

945279.27 hits per line

dnanexus-rnd / GLnexus / 2075 / 2
93%
master: 93%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 2075.2 (TRAVIS_BUILD_TYPE=Coverage)

dnanexus-rnd / GLnexus / 2075 / 2 93% master: 93%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 2075.2 (TRAVIS_BUILD_TYPE=Coverage)

dnanexus-rnd / GLnexus / 2075 / 2
93%
master: 93%

README BADGES
x