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Added two optional keyword arguments to show_rdkit() (#853)

* - added an optional confId keyword argument to show_rdkit()
- added an optional fmt keyword argument to show_rdkit(); if fmt is not provided, a simple heuristic is used to guess if the RDKit molecule should be converted to a SDF or a PDB block

* - applied requested changes
- added support for SDF files and confId to the RdkitStructure class
- added relevant tests

* Refactor

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