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Ran 25 Sep 2019 07:37AM UTC

Files 41

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Committed 25 Sep 2019 07:29AM UTC coverage: 87.207% (-0.8%) from 88.004%

Job # 169.1

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Develop (#58)

* Initiate gitflow

* Change from using 'pickle' modlule to serialize data for later use (#50)

feat: MutAcc dumps files as son for later import

* Allow for updating existing cases, and version fastq-files generated … (#51)

feature: Option to replace previous uploaded cases

The user can chose to replace a previous uploaded cases with the '--replace' flag
The fastq-files created for the cases gets versioned according to current date

* Code owners (#55)

* Add codeowners and PR template

* update changelog

* Demo (#53)

feat[CLI]: Added a user demo

* Creating demo

A demo, explaining the usage of mutacc is now availible.

* Fix demo readme in docs/demo.md

* Add igv snapshot

* Make path to demo files relative to mutacc package + refactor code

* Small fix

* fix TYPE vs. SVTYPE ID in vcf files

* feat(cli) add command to version a dataset

* Add command to version a dataset

* fix

* Update changelog

* Fix test to only use mocked mongo connections

* Refactoring and added tests

* Allow user to make options based queries on some parameters such as v… (#57)

* Allow user to make options based queries on some parameters such as variant type, and analysis type

* Remove unecessary schema definitions

* Add query options to view commands

Run Details

1043 of 1196 relevant lines covered (87.21%)

0.87 hits per line

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