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Handling #50, #56, #52. Adding additional tests

https://github.com/dsanel/mongoose-delete/pull/52 Counter mongo index bug with $ne and count()
https://github.com/dsanel/mongoose-delete/issues/50 do not use $ne operator
https://github.com/dsanel/mongoose-delete/pull/56 Fix Mongoose DeprecationWarning: collection.update is deprecated

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