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switch from mvicuna to clumpify-based dedup in taxon_filter.py deplete

replace mvicuna-based read deduplication in taxon_filter.py::deplete() with clumpify-based deduplication that occurs farther upstream in advance of BWA-based depletion; add dedup_bam WDL workflow; in dedup_bam WDL task, create and emit FastQC report of only de-duplicated reads; update unit test input to include dup reads, and update expected output for the test_taxon_filter::TestDepleteHuman integration tests to reflect difference in output from clumpify vs previous mvicuna output

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