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Ran 28 Jun 2019 04:51PM UTC

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Committed 28 Jun 2019 04:39PM UTC coverage: 78.583% (+0.03%) from 78.557%

Job # PYVER=3.7

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push

travis-ci

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web-flow

Commit Message

Fix BngSimulator when supplying initials as params (#450)

The Simulator class allows users to change initials by supplying
new underlying parameter values (if both initials and params are
supplied, initials take precedence).

This behaviour was broken in the BngSimulator, which uses a dict
for initials instead of arrays, as some its simulators (e.g. NFsim)
are network free and thus may not have an exhaustive species list.

This PR fixes the issue by fixing the initials_dict implementation,
and also refactors the initials array code to use this code as well,
helping to reduce code duplication.

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