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Neuroinflab / kCSD-python / 229 / 2
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master: 62%

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DEFAULT BRANCH: master
Ran 03 Jun 2019 04:29PM UTC
Files 18
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03 Jun 2019 04:23PM UTC coverage: 61.544%. Remained the same
DISTRIB="conda" PYTHON_VERSION="3.5" NUMPY_VERSION="1.10.4" SCIPY_VERSION="0.16.1" SIX_VERSION="1.10.0" COVERAGE="true"

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ccluri
Error propagation figure tuning (#103)

* 'Fixed `gauss_2d_large()`.

`kcsd.validation.csd_profile.gauss_2d_large(seed=63)` does not return
NaN anymore.

`repeatUntilValid()` decorator has been defined for that purpose.

A simple test for the fix provided in the `__main__` section of the module.

Note: The issue has not been solved by fixing distribution of
the `zs` variable in order to provide backward-compatibility.

* 2**32 - 1 included as possible alternative seed in the `kcsd.validation.csd_profile.repeatUntilValid()` decorator.

* Protection of `repeatUntilValid()` decorator against (extremely unlikely) neverending loop of seeds.

* `repeatUntilValid()` decorator reffactored
Seed sequence generation moved to `seedSequence()` generator function.

* `seedSequence()` generator function simplified (the generated sequence has changed though).

* Remove unnecessary imports

According to https://docs.python.org/3/library/builtins.html imports
from `builtsin` are unnecessary. As `builtsin` is Python 3 only,
their removal increases beckward-compatibility of the package.

Fixes #77

* Error Propagation Maps figure

I have included code which generates figure with EPMs (Fig. 7 at the
moment). Also, `colorblind_friendly` module with definition of
colorblind friendly colors is provided, which my code depends on.

* Error propagation maps dependencies reduced

The code of the `colorblind_friendly` module embedded in (copied into)
the script generating error propagation maps.

* Saving of figure of error propagation maps

The figure is saved as "error_propagation.pdf".

* Shabang provided

* Error propagation map figure tuning

Between-panel distance reduced.
Smart precision of ticklabels in both subplots (before only left plot).

* `chmod +x error_propagation.py`

1778 of 2889 relevant lines covered (61.54%)

0.62 hits per line

Source Files on job 229.2 (DISTRIB="conda" PYTHON_VERSION="3.5" NUMPY_VERSION="1.10.4" SCIPY_VERSION="0.16.1" SIX_VERSION="1.10.0" COVERAGE="true")
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