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Setup improvements (#1245)

* Sort treatments before autotune

* calculate CR even if the last CRDatum didn't have Insulin dosed

* pkill -f oref0-pump-loop during oref0-setup

* npm audit fix during oref0-setup

* need to run npm audit fix from src/oref0/

* run npm install -g w/o sudo too, to override any older install

* Revert "need to run npm audit fix from src/oref0/"

This reverts commit b33867f6c.

* Revert "npm audit fix during oref0-setup"

This reverts commit 6f80e8860.

* update Debian first to fix github cert validation failure on old rigs

* remove any old global oref0 install first

* Revert "remove any old global oref0 install first"

This reverts commit f6ca089e0.

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