broadinstitute / hellbender / 514 / 1

Ran 03 Mar 2015 07:36PM UTC

Files 197

Run time 13s

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Committed 03 Mar 2015 07:24PM UTC coverage: 74.657%. First build

Job # TERM=dumb

Build Type

push

travis-pro

Committed by

droazen

Commit Message

Refactor *Context classes to return empty Collections/iterators when there is no backing data source

-ReferenceContext and FeatureContext are now guaranteed to be non-null in ReadWalker.apply(),
 and simply return empty Collections/iterators when there is no backing data source (previously,
 these were wrapped in Optional objects, and would be Optional.empty() if there was no source
 of reference and/or Feature data)

 This spares tool authors from having to explicitly check for the existence of reference/Feature
 contextual data before using it.

-For tools that care about the distinction between the "no data source" case and the "no records
 overlapping the current interval" case, there is now a hasBackingDataSource() method in both
 ReferenceContext and FeatureContext.

Requested by Valentin!

Resolves #244

Run Details

10231 of 13704 relevant lines covered (74.66%)

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