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Ran 21 Mar 2019 04:28PM UTC

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Committed 21 Mar 2019 03:53PM UTC coverage: 78.665% (+0.05%) from 78.618%

Job # PYVER=2.7

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push

travis-ci

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web-flow

Commit Message

Fix BioNetGen importer and related tests (#406)

* Fix BioNetGen importer and related tests

* Ensure PySB imported model trajectories match BNG ones (#401)
* Employ reduced precision for checking models containing expressions
  with division. Sympy converts (x/y) to (x*y**(-1)), which results
  in lost precision where x and y are large.
* Fix import for models which contain (dynamic) expressions dependent
  on constant expressions. Previously, the latter were converted
  to generic sympy symbols during import.
* Preserve parameters in expressions, rather than convert them to
  numeric values on import.
* MoveConnected and Observables species compartments in BNGL importer

Fixes: #401

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