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coverage: workaround for XML reporting bug

There’s a bug in coverage.py when using the source
specifier which causes the XML reports to omit the
first element of the directory name, breaking some
tools (this does not affect the HTML or text 
format reports).

Using include instead avoids this problem until
the upstream bug is resolved:

https://github.com/nedbat/coveragepy/issues/578

201 of 424 branches covered (47.41%)

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1290 of 1814 relevant lines covered (71.11%)

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