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refactor: improve code structure based on codeclimate hints

This only restructures the code to be more readable based on hints from
codeclimate analysis:

- introduce EntityAssigner and EntityTransformer helpers
- simplify metadata discovery code
- simplify MetadataValidator and EntityHelper
- simplify MySqlConnection
- move common parts of MySQL and Sqlite drivers to their parent
- introduce QueryBuilderHelper and simplify QueryBuilder

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