98: 63%

Ran 13 Feb 2019 03:43PM UTC

Files 162

Run time 19min

Badge

Embed ▾

Committed 14 Jan 2019 05:57PM UTC coverage: 63.077%. Remained the same

Job # COVERALLS=true

Build Type

cron

travis-ci

Committed by

muffato

Commit Message

Merge branch 'release/96'

* release/96: (27 commits)
  Renamed ensembl to vertebrates
  Added a new script to merge all the release graphs into one.
  Added a script that can fill the is_good_for_alignment column for older genomes, based on their dnafrags
  New script that can fix out-of-bounds genomic_aligns by trimming them
  Added the Synteny pipeline to the graph
  Match the names of the other files
  LastZ, not LASTZ
  Species-trees is a requirement of Protein-trees
  bugfix: Families are not necessarily on the same species-set as the rest, but should all be reported to the default clusterset_id
  Speed up the update with an index on gene_member_id
  Imports not needed
  Core have introduced this method in MetaContainer
  Set is_good_for_alignment to 0 initially rather than approximating it with is_high_coverage
  Discard the families that have no Ensembl members
  Store the Family members with a bulk_insert without having to fetch them
  Only print the content in debug mode, and with the various tags
  Added a method to get the source names of a list of member_ids
  Follow the naming nomenclature count_all_by
  Removed deprecated methods
  Set is_good_for_alignment to 0 initially rather than approximating it with is_high_coverage
  ...

Run Details

12495 of 19809 relevant lines covered (63.08%)

735.44 hits per line

Ensembl / ensembl-compara / 4204 / 1
37%
release/98: 63%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 4204.1 (COVERALLS=true)

Ensembl / ensembl-compara / 4204 / 1 37% release/98: 63%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 4204.1 (COVERALLS=true)

Ensembl / ensembl-compara / 4204 / 1
37%
release/98: 63%

README BADGES
x