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conda fixes related to changed bioconda guidelines (#906)

Updates to reflect current bioconda guidelines:

bioconda channel priorities now put conda-forge before bioconda, and do not use r: https://bioconda.github.io/#set-up-channels
bioconda now uses openjdk: https://bioconda.github.io/guidelines.html#java

Also updated requirements-minimal.txt to match versions in requirements-conda.txt .

419 of 2743 branches covered (15.28%)

2104 of 6660 relevant lines covered (31.59%)

0.32 hits per line