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Ready for v2.0.0-rc.1 (#53)

* Final enhancements for rc.1 (#52)

* Enhancements Update
- Resolves #35
- Resolves #48
- Resolves #49
- Resolves #50
- Resolves #51

General:
-Added more detailed building and testing instruction to README
-Added CONTRIBUTING.md file with details about how people can contribute to the project
-Added CHANGELOG.md file with a detailed list of changes in this release
-Updated README by adding links to the Changelog and the Contributing instructions file
-Changed Parameters_Simulation and Parameters_Lattice structs into classes
-Update copyright dates in Doxygen documentation for the Event, Lattice, Object, Simulation, Site, Parameters_Simulation, and Parameters_Lattice classes
-Added info about the new parameters classes to README
-Updated makefile to build the new parameters classes and added output of compiler warnings to the PGI compiler flags
-Updated Doxyfile with the next version number
-Fixed bug where Doxygen was not including the main markdown files in the documentation
-Updated Doxygen documentation

Lattice class:
-Updated init function to check the input lattice parameters and throw an invalid argument exception if they are not valid

Object class:
-Updated calculateDisplacement function to allow user to specify a direction for when one wants to calculate the absolute displacement only along a particular Cartesian direction

Parameters_Lattice class:
-Added checkParameters function to check the validity of the parameter member variables

Parameters_Simulation class:
-Added checkParameters function to check the validity of the parameter member variables
-Added nullptr as the default value for the Logfile pointer

Simulation class:
-Updated init function to check the input parameters and throw an invalid argument exception if they are not valid
-Updated init function lattice construction to use the Parameters_Lattice object within the Parameters_Simulation object

Utils:
-Ad... (continued)

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