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Ran 06 Dec 2018 03:20AM UTC

Files 80

Run time 2850min

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Committed 06 Dec 2018 03:03AM UTC coverage: 64.959% (-0.4%) from 65.353%

Job # SCT_MINICONDA=2 MPLBACKEND=Agg

Build Type

push

travis-ci

Committed by

jcohenadad

Commit Message

spinalcordtoolbox/vertebrae/detect_c2c3 -- New module (#2084)

* add folder spinalcordtoolbox/vertebrae and script file detect_c2c3

* integrate isct_spine_detect

* add a function flatten_sagittal with matrices as input instead of filenames

* detection pipeline for c2c3 disc

* center label according cOm of seg

* load model from data

* add models to download data

* init file

* remove hard coded path used for prototyping

* verbose=0 when running detector

* explain how to train a model

* use temporary folder for temporary files

* add blank line at the end of the file

* oups

* do not raise exception

* sct_label_vertebrae: Replaced automatic disc detection

By default, the function is now using the new detect_c2c3 spinalcordtoolbox function developed by @charleygros.

* sct_label_vertebrae: Clean old comments

* sct_label_vertebrae: Removed old c2c3 detection

* sct_label_vertebrae: mention "detect_c2c3" Python module in the usage

* detect_c2c3: add guidlines to retrain a model

* detect_c2c3: add training pipeline

* sct_download_data: add bin file for training SVM on OSF and miror

* sct_download_data: add c2c3 models on OSF

* config_file.py: Clarified doc for creating pickle

* travis.yml: Now specifying Linux distro: 16.04

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master: 59%

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