broadinstitute / viral-ngs / 6881 / 5

23%

master: 23%

push

travis-ci

add fallback method for bioconda wrapper of gatk v3 (#902)

add install method for `gatk` executable as well as `gatk3` as provided by bioconda.  The current [recipe](https://github.com/bioconda/bioconda-recipes/blob/master/recipes/gatk/build.sh) uses gatk3, however a new install received a package build with the older `gatk` executable name (some bioconda packages are currently in build flux). This adds a fallback method so either executable supplied by bioconda will work.

2541 of 4194 branches covered (60.59%)

7240 of 9682 relevant lines covered (74.78%)

0.75 hits per line