broadinstitute / viral-ngs / 6833 / 6

23%

master: 23%

push

travis-ci

respec snakemake per-rule mem requirement: s/mem/mem_mb/g (#897)

* respec snakemake per-rule mem requirement: s/mem/mem_mb/g

mem_mb is now the preferred way to specify rule-specific memory; this param is recognized by certain execution engines such as kubernetes. See: https://snakemake.readthedocs.io/en/v5.3.0/executable.html#kubernetes

* add run-pipe_local.sh; scale spades mem to 90% of requested per-job

* increase spades memory

* correct run-pipe_local.sh script description comment

418 of 2739 branches covered (15.26%)

2088 of 6641 relevant lines covered (31.44%)

0.31 hits per line