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master: 81%

Ran 23 Jan 2015 04:01PM UTC

Files 140

Run time 1min

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Committed 23 Jan 2015 03:55PM UTC coverage: 63.495%. Remained the same

Job # TERM=dumb

Build Type

push

travis-pro

Committed by

lbergelson

Commit Message

Major changes to the command line parsing system
-using jopt-simple to do the actual parsing
-supports short (-h) and long (--help) styles
-supports boolean flags with or without an argument
-options are now case sensitive
-argument collections can be specified with @ArgumentCollection
-Option(fullname) is now respected if specified, if it isn't it defaults to use the field name
-several Option values are no longer used, overrideable
-NestedOptions removed -> replaced by ArgumentCollection
-Arguments must now be uniquely specified (no arguments targetting multiple fields any more)
-Collection defaults are now replaced rather than appended too

-opportunistically fixed a broken test in CreateSequenceDictionaryTest

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7455 of 11741 relevant lines covered (63.5%)

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broadinstitute / hellbender / 222 / 1
63%
master: 81%

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broadinstitute / hellbender / 222 / 1 63% master: 81%

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Source Files on job 222.1 (TERM=dumb)

broadinstitute / hellbender / 222 / 1
63%
master: 81%

README BADGES
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