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Ran 22 Jan 2015 05:58PM UTC

Files 138

Run time 1min

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Committed 22 Jan 2015 05:51PM UTC coverage: 63.703%. Remained the same

Job # TERM=dumb

Build Type

push

travis-pro

Committed by

droazen

Commit Message

Allow reference window in ReferenceContext objects to be set dynamically by tools

Some tools need to dynamically resize the reference context window based upon other
input. This commit exposes a setWindow() method to allow tools to do this.

-To change the reference context size, tools should invoke setWindow() on the
 ReferenceContext provided by the engine before invoking getBases()/getBasesIterator().

-Hopefully eliminates the need for tools to create their own reference readers

-ReferenceContext still caches previous query results, but cache gets invalidated
 every time the window size changes.

Resolves #131

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