broadinstitute / viral-ngs / 6523 / 6
32%
master: 23%

Ran 27 Jul 2018 07:26PM UTC

Files 41

Run time 4s

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Committed 27 Jul 2018 07:11PM UTC coverage: 32.289%. First build

Job # TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util --cov file_utils"

Build Type

push

travis-ci

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Commit Message

bump pysam, samtools

samtools (and htslib) 1.7 -> 1.9
pysam 0.14.1 -> 0.15.0

Coverage Stats

2050 of 6349 relevant lines covered (32.29%)

0.32 hits per line

Source Files on job 6523.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util --cov file_utils")