6
23%
master: 23%

Ran 09 Jul 2018 07:40PM UTC

Files 41

Run time 4s

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Committed 09 Jul 2018 07:27PM UTC coverage: 32.726% (+0.5%) from 32.241%

Job # TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

conftest.py fixes (#840)

Changed tmpdir_{session,module,function} to use tempfile.mkdtemp(),
and to check if the tempdir still exists before trying to erase it.
In tmpdir_function() switch to using monkeypatch; this fixes a bug
where if TMPDIR was originally unset it will be left set to the
now-deleted tempdir.

Made string_to_file_name more robust, added unit test for it.

Run Details

2047 of 6255 relevant lines covered (32.73%)

0.33 hits per line

Source Files on job 6199.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure])

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