6
23%
master: 23%

Ran 27 Jun 2018 09:14PM UTC

Files 41

Run time 4s

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Committed 27 Jun 2018 08:51PM UTC coverage: 32.251% (+0.01%) from 32.241%

Job # TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

bugfixes to bwa deplete (#827)

* decrease bwa worker count to debug OOM SIGKILL of bwa

* comment out -@ threads arg from samtools view to debug segfault

* add comments

Run Details

2007 of 6223 relevant lines covered (32.25%)

0.32 hits per line

Source Files on job 6059.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure])

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