98: 63%

Ran 16 May 2018 11:49AM UTC

Files 161

Run time 7s

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Committed 16 May 2018 11:28AM UTC coverage: 62.912% (-0.01%) from 62.922%

Job # COVERALLS=true

Build Type

push

travis-ci

Committed by

muffato

Commit Message

Merge branch 'release/93'

* release/93: (46 commits)
  This should be a proper array, not a string
  bugfix: such die statements need to be in pipeline_checks_pre_init, not pipeline_create_commands
  We don't need to fetch all the homologies to find the species-tree
  Need INPUT_PLUS to propagate all the parameters, incl. the original goc_mlss_id
  I think this was not the correct fix
  Need INPUT_PLUS to propagate all the parameters, incl. the original goc_mlss_id
  Increased priority for the slowest alignments
  More memory
  The parameter is called ensembl_release and has to be stored in the database
  Use ensro for safety
  bugfix: verify the coord_system_name before defining it.
  Only reference dnafrags are needed.
  Release specific changes.
  Setting up priorities.
  bugfix: Fixing a typo.
  When tree is loaded from file all nodes need to have the adaptor.
  bugfix: leaves (n_children == 0) are fine
  If we could not make a string, fall back to the way of the parent class (NestedSet): the node name
  $self->node_type can be undefined. This change is to avoid a warning from Perl
  bugfix: missing single quotation mark.
  ...

Coverage Stats

12003 of 19079 relevant lines covered (62.91%)

762.46 hits per line

Ensembl / ensembl-compara / 2848 / 1
37%
release/98: 63%

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Ensembl / ensembl-compara / 2848 / 1 37% release/98: 63%

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Source Files on job 2848.1 (COVERALLS=true)

Ensembl / ensembl-compara / 2848 / 1
37%
release/98: 63%

README BADGES
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