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Source yapf file from project root (#1315)

First three commits are from @jonmoore : 

* Source yapf style file from elpy-project-root or default-directory in preference to os.getcwd()

* make new directory arg to elpy--fix-code-with-formatter optional.

* make directory optional  in yapfutil.fix_code.

* Add documentation on yapf style file

* Also use project config for pep8

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