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<a href="https://github.com/wikimedia/parsoid/commit/3e7445cea">DOM Passes: add option to enable/disable it on nested DOMs

* This eliminates the repetitive pattern of checking for whether
  the pass should be run on the top level dom or not.

* Made table and li fixups run once on the top level DOM.
  There is really no reason to do them piecemeal.

  Table fixups especially make more sense when the entire DOM
  has been assembled since those fixups are entirely about
  cobbling together information from pieces.

TODO:
1. There is some straggler use of atTopLevel in cleanup.js.
   If we are able to get rid of it, we can stop passing in this
   parameter into the handlers and processors.

2. It is not entirely clearly if extensions would need to run
   any dom analysis on nested doms or if they need to only do
   it on the global dom. To be resolved and fixed.

Change-Id: I</a><a class="double-link" href="https://github.com/wikimedia/parsoid/commit/98d8374d7">98d8374d7</a>

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