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Ran 23 Jan 2018 10:14PM UTC

Files 97

Run time 85min

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Committed 23 Jan 2018 10:00PM UTC coverage: 73.863% (-0.009%) from 73.872%

Job # 754.2

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Fix cupsoda simulator error on Tyson model (#332)

CupSodaSimulator was erroring on the models with rates consisting
of a single Parameter or Expression. Calling .args on these returns
a string, not a pysb.Component object, which fails when we try to
multiply together to get the rate. This commit introduces a check
and workaround in the CupSodaSimulator.

I've also removed the pycuda.autoinit import, which triggers GPU
initialization when pysb.simulator is imported, even if a
CupSodaSimulator is not instantiated. Instead, pycuda is initialized
on demand within the n_blocks function.

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