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master: 23%

Ran 29 Nov 2017 01:55AM UTC

Files 45

Run time 2s

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Committed 29 Nov 2017 01:33AM UTC coverage: 71.189%. First build

Job # TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

build re-org and cleanup and WDL & dnanexus work (#731)

This PR:
- reorganizes .travis.yml to make it easier to follow -- less conditionals
- tests unit & integration with every branch commit (instead of just PRs and master) in both Py2.7 and Py3.6
- speeds up conda and pytest Travis jobs a bit
- adds Cromwell (on local Travis instance) testing
- adds DNAnexus test job launching (though we do not wait for them to complete)
- gets the DNAnexus dxWDL compiled workflows working!
- bugfixes for bmtagger DB build: default value for word_size should be 18, not 8. fixes the use of fasta databases for taxon_filter.deplete_bmtagger_bam (and deplete_human).
- move docker images to quay.io

Run Details

6024 of 8462 relevant lines covered (71.19%)

0.71 hits per line

Source Files on job 5171.5 (TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure])

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