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Make pytraj work with pypy (#1431)

* remove me

* pypy

* fix

* typos

* pypy

* more

* numpy

* here

* here

* then

* fix test

* correctly skipping mpi4py

* fixing py2

* fix test

* more

* more

* here

* test

* more

* more

* clean

* more

* hre

* more

* final

* wtf

* wtfg

* do not need that

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