4
91%
master: 91%

Ran 13 Oct 2017 11:08AM UTC

Files 42

Run time 2s

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Committed 13 Oct 2017 11:03AM UTC coverage: 82.148% (+0.2%) from 81.996%

Job # 3467.4

Build Type

push

jenkins

Committed by Frank Austin Nothaft

Commit Message

[AVOCADO-253] Add joint variant caller, direct save to VCF.

Resolves #199, #253. Adds back a joint variant caller that computes rolled up
variant level statistics and that saves directly out to VCF. This uses a
binomial prior based on the alternate allele frequency to update the genotypes.
We use the posteriors to generate the variant quality score.

Coverage Stats

1224 of 1490 relevant lines covered (82.15%)

0.82 hits per line

bigdatagenomics / avocado / 3467 / 4
91%
master: 91%

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bigdatagenomics / avocado / 3467 / 4 91% master: 91%

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Markdown

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RDoc

HTML

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bigdatagenomics / avocado / 3467 / 4
91%
master: 91%

README BADGES
x