Ran
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Files
11
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Run time
1s
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Badge
README BADGES
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push
jenkins
122 of 323 relevant lines covered (37.77%)
0.38 hits per line
Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line |
---|---|---|---|---|---|---|---|
0.0 | ...org/bdgenomics/cannoli/util/QuerynameGrouper.scala | 38 + 14 | 5 - 10 | 0 - 8 | 5 - 2 | 0.0 - 1.0 | |
3.57 | ...rc/main/scala/org/bdgenomics/cannoli/cli/Bwa.scala | 212 + 197 | 56 + 47 | 2 - 1 | 54 + 48 | 1.0 | |
6.9 | ...in/scala/org/bdgenomics/cannoli/cli/Bedtools.scala | 125 - 70 | 29 - 51 | 2 - 19 | 27 - 32 | 1.0 | |
8.33 | ...n/scala/org/bdgenomics/cannoli/cli/Freebayes.scala | 109 + 49 | 24 - 9 | 2 - 10 | 22 + 1 | 1.0 | |
8.33 | ...main/scala/org/bdgenomics/cannoli/cli/SnpEff.scala | 110 + 79 | 24 + 5 | 2 - 4 | 22 + 9 | 1.0 | |
10.53 | ...ain/scala/org/bdgenomics/cannoli/cli/Bowtie2.scala | 86 + 44 | 19 - 5 | 2 - 10 | 17 + 5 | 1.0 | |
10.53 | ...main/scala/org/bdgenomics/cannoli/cli/Bowtie.scala | 91 + 53 | 19 | 2 - 6 | 17 + 6 | 1.0 | |
11.76 | ...scala/org/bdgenomics/cannoli/cli/SampleReads.scala | 81 + 64 | 17 + 8 | 2 - 3 | 15 + 11 | 1.0 | |
51.35 | ...ain/scala/org/bdgenomics/cannoli/cli/Cannoli.scala | 129 - 122 | 37 - 104 | 19 - 24 | 18 - 80 | 1.0 | |
94.81 | ...a/org/bdgenomics/cannoli/cli/InterleaveFastq.scala | 226 + 204 | 77 + 66 | 73 + 66 | 4 | 1.0 |