1
87%
master: 87%

Ran 17 Aug 2017 10:53AM UTC

Files 20

Run time 1s

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Committed 17 Aug 2017 10:47AM UTC coverage: 87.952% (+0.03%) from 87.922%

Job # 155.1

Build Type

push

travis-ci

Committed by

jeremymcrae

Commit Message

fixed bug when looking for symbols matches with '*' alleles

There was a bug when logging the variants for a gene. For logging
purposes I prefer HGNC symbols to HGNC IDs, so I preferentially convert
the HGNC ID to a HGNC symbol from the symbols for the first alt allele.
However, in multi-allelic sites where the first allele is ‘*’, there are
no annotated gene symbols to match up against, thus raising the
KeyError.

This now checks symbols for the other alleles when this error occurs.

Run Details

1774 of 2017 relevant lines covered (87.95%)

0.88 hits per line

jeremymcrae / clinical-filter / 155 / 1
87%
master: 87%

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Source Files on job 155.1

jeremymcrae / clinical-filter / 155 / 1 87% master: 87%

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Markdown

Textile

RDoc

HTML

Rst

Source Files on job 155.1

jeremymcrae / clinical-filter / 155 / 1
87%
master: 87%

README BADGES
x