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Ran 16 Aug 2017 02:48PM UTC

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Committed 16 Aug 2017 02:46PM UTC coverage: 74.477% (-4.2%) from 78.67%

Job # 235.1

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push

travis-ci

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web-flow

Commit Message

Merge pull request #42 from tomdcsmith/trait_mapping_pipeline_v2

EVA-808 New script to map trait names in ClinVar records against ontology terms present in EFO.
* First queries Zooma and uses any high confidence mappings in EFO
* Outputs any non-high confidence EFO mappings for manual curation
* Uses any high confidence non-EFO mappings to query OxO
* Uses any OxO mappings with a distance of 1 and in EFO as a finished mapping
* Outputs any OxO mappings in EFO with a xref distance greater than 1 for manual curation

Run Details

890 of 1195 relevant lines covered (74.48%)

0.74 hits per line

EBIvariation / eva-cttv-pipeline / 235 / 1
79%
master: 79%

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EBIvariation / eva-cttv-pipeline / 235 / 1 79% master: 79%

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Markdown

Textile

RDoc

HTML

Rst

Source Files on job 235.1

EBIvariation / eva-cttv-pipeline / 235 / 1
79%
master: 79%

README BADGES
x