bigdatagenomics / adam / 2833 / 7

Ran 17 Jul 2017 02:29PM UTC

Files 138

Run time 4s

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Committed 17 Jul 2017 01:35PM UTC coverage: 83.642% (+0.02%) from 83.627%

Job # 2833.7

Build Type

push

jenkins

Committed by

heuermh

Commit Message

[ADAM-1554] Support saving BGZF VCF output.

Resolves #1554. Additionally:

* Moves VCF file extension logic into ADAM, since Hadoop-BAM does not recognize
  .bgzf as a valid BGZF extension
* Refactored VCF output formats to remove need for ADAMHeaderlessVCFOutputFormat

Coverage Stats

5783 of 6914 relevant lines covered (83.64%)

0.84 hits per line

bigdatagenomics / adam / 2833 / 7

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