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Files
18
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Run time
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README BADGES
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jenkins
67 of 226 relevant lines covered (29.65%)
0.3 hits per line
Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line |
---|---|---|---|---|---|---|---|
0.0 | .../main/scala/org/bdgenomics/cannoli/Freebayes.scala | 109 - 6 | 10 - 36 | 0 - 44 | 10 + 8 | 0.0 - 428 | |
0.0 | src/main/scala/org/bdgenomics/cannoli/SnpEff.scala | 109 - 58 | 13 - 53 | 0 - 66 | 13 + 13 | 0.0 - 12 | |
0.0 | ...c/main/scala/org/bdgenomics/cannoli/Bedtools.scala | 123 + 123 | 15 + 15 | 0 | 15 + 15 | 0.0 | |
0.0 | ...rc/main/scala/org/bdgenomics/cannoli/Bowtie2.scala | 87 - 262 | 11 - 175 | 0 - 125 | 11 - 50 | 0.0 - 97 | |
0.0 | ...rc/main/scala/org/bdgenomics/cannoli/Cannoli.scala | 38 + 6 | 3 - 2 | 0 - 5 | 3 + 3 | 0.0 - 3 | |
0.0 | src/main/scala/org/bdgenomics/cannoli/Bowtie.scala | 87 - 15 | 11 - 30 | 0 - 31 | 11 + 1 | 0.0 - 30 | |
0.0 | src/main/scala/org/bdgenomics/cannoli/Bwa.scala | 155 - 124 | 28 - 103 | 0 - 124 | 28 + 21 | 0.0 - 73 | |
0.0 | ...org/bdgenomics/cannoli/util/QuerynameGrouper.scala | 37 + 3 | 4 - 1 | 0 - 5 | 4 + 4 | 0.0 - 7 | |
0.0 | src/main/scala/org/bdgenomics/cannoli/Bwa.scala | 155 - 124 | 13 - 118 | 0 - 124 | 13 + 6 | 0.0 - 73 | |
0.0 | .../main/scala/org/bdgenomics/cannoli/Freebayes.scala | 109 - 6 | 13 - 33 | 0 - 44 | 13 + 11 | 0.0 - 428 |