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Ran 16 Aug 2014 04:51AM UTC

Files 62

Run time 28s

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Committed 16 Aug 2014 04:45AM UTC coverage: 87.573% (-0.05%) from 87.625%

Job # 712.1

Build Type

push

travis-ci

Committed by

MauricioCarneiro

Commit Message

Sam: implementation of mate_alignment_stop()

* fix off-by-one bug on Sam::alignment_stop (it was reporting the base after the last inclusive base, contradicting the docs)
* refactor cigar operator parsing routine from SamBuilder to Cigar class for mutual use
* add consumes_read_bases and consumes_reference_bases as static methods to the Cigar class
* add tests to the new API and all new functions

This sets the base for issue #6

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