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PYTHON_VERSION=2.7 NUMPY_VERSION=1.7 WITH_DOCTEST=True

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jairideout 
Merge pull request #592 from gregcaporaso/issue-535

adding public function for creating identity substitution matrices

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Source Files on job 1334.3 (PYTHON_VERSION=2.7 NUMPY_VERSION=1.7 WITH_DOCTEST=True)