bigdatagenomics / adam / 2526 / 1

Ran 21 Mar 2017 02:52PM UTC

Files 243

Run time 10s

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Committed 21 Mar 2017 02:44PM UTC coverage: 80.384% (-0.2%) from 80.587%

Job # 2526.1

Build Type

push

jenkins

Committed by

heuermh

Commit Message

[ADAM-1442] Fix thread pool deadlock in GenomicRDD.pipe

Resolves #1442. Eliminates use of thread pool in GenomicRDD and instead launches
the InFormatterRunner (which extends `Callable`) as a thread and runs the
OutFormatterRunner in the original thread that launched the piped subprocess.

Additionally, rewrote the `AnySAMOutFormatter` to improve performance.

Coverage Stats

4688 of 5832 relevant lines covered (80.38%)

0.8 hits per line

bigdatagenomics / adam / 2526 / 1

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