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Ran 25 Jul 2014 05:33PM UTC

Files 56

Run time 26s

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Committed 25 Jul 2014 05:04PM UTC coverage: 70.577%. First build

Job # 505.1

Build Type

push

travis-ci

Committed by

MauricioCarneiro

Commit Message

Variant: read api for format field strings

There was a bug with the implementation that wasn't concordant with how
htslib parses the strings in the bcf1_t structure. It now works by
checking for bcf_string_vector_end values to separate the strings, and
skips blocks to find the values for every sample using the fixed length
blocks as defined by bcf_fmt_t->size.

Support for vector of strings per sample is not yet agreed upon in the
VCF/BCF spec, so comma separated strings will be treated as a single
string by htslib and thus by Gamgee.

fixes #78

Run Details

722 of 1023 relevant lines covered (70.58%)

53.76 hits per line

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