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Files
116
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Run time
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README BADGES
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travis-ci
3891 of 4688 relevant lines covered (83.0%)
0.83 hits per line
Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line |
---|---|---|---|---|---|---|---|
0.0 | ...org/bdgenomics/adam/rdd/ReferencePartitioner.scala | 57 | 7 | 0 | 7 | 0.0 | |
0.0 | ...scala/org/bdgenomics/adam/util/ParquetLogger.scala | 34 | 2 | 0 | 2 | 0.0 | |
0.0 | .../bdgenomics/adam/util/ParquetFileTraversable.scala | 85 | 23 | 0 | 23 | 0.0 | |
0.0 | ...nomics/adam/rdd/variant/VariantAnnotationRDD.scala | 64 | 3 | 0 | 3 | 0.0 | |
0.0 | ...ithms/consensus/ConsensusGeneratorFromKnowns.scala | 91 | 11 | 0 | 11 | 0.0 | |
0.0 | ...onsensus/ConsensusGeneratorFromSmithWaterman.scala | 91 | 15 | 0 | 15 | 0.0 | |
31.58 | ...la/org/bdgenomics/adam/models/VariantContext.scala | 160 | 19 | 6 | 13 | 1.0 | |
37.5 | .../org/bdgenomics/adam/rdd/variant/GenotypeRDD.scala | 128 | 16 | 6 | 10 | 1.0 | |
45.45 | ...org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala | 117 | 11 | 5 | 6 | 1.0 | |
47.5 | .../read/recalibration/BaseQualityRecalibration.scala | 131 | 40 | 19 | 21 | 1.0 |