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master: 87%

Ran 24 Nov 2016 04:55PM UTC

Files 19

Run time 1s

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Committed 24 Nov 2016 04:48PM UTC coverage: 88.277% (+0.003%) from 88.274%

Job # 136.1

Build Type

push

travis-ci

Committed by

jeremymcrae

Commit Message

fix handling alt alleles with zero depth

Previously we mucked around with the HGNC and ENST lists, but I have
refactored this, so that we identify alt alleles with zero depth,
then mask them from the gene and consequence lists. This meant the
gene variant.genes and variant.consequence lists have now been
standardised as nested lists of lists, one entry per alt allele.

Unit tests have been updated, and I've check that this gives the
same variants as previous iterations.

Run Details

1747 of 1979 relevant lines covered (88.28%)

0.88 hits per line

jeremymcrae / clinical-filter / 136 / 1
87%
master: 87%

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Markdown

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RDoc

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jeremymcrae / clinical-filter / 136 / 1
87%
master: 87%

README BADGES
x