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Ran 07 Jul 2026 02:57PM UTC

Files 48

Run time 6s

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Committed 07 Jul 2026 02:52PM UTC coverage: 84.954%. Remained the same

Job # 28875715986.1

Build Type

push

github

Committed by

web-flow

Commit Message

3.9.0: restore fibroblast to SOLID_TUMOR_LINEAGE_PROGRAMS (#335)

Corrects #327: keeping fibroblast is what gives cross-lineage detection its handle on tumor+immune (collagen reads as fibroblast → tumor+T = 2 programs → flagged) and CAF+immune doublets. A pure tumor cell is collagen-only = 1 program = not flagged, so the self-flag worry doesn't hold; the gate removes rather than annotates (tumor labeling is MarkerCountOverride, separate). Preset now keeps all default lineages + folds osteoclast into myeloid. Closes #334.

Coverage Stats

12761 of 15021 relevant lines covered (84.95%)

0.85 hits per line

pirl-unc / tcrsift / 28875715986 / 1
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main: 85%

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Source Files on job python-3.12 - 28875715986.1

pirl-unc / tcrsift / 28875715986 / 1 85% main: 85%

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Markdown

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RDoc

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Source Files on job python-3.12 - 28875715986.1

pirl-unc / tcrsift / 28875715986 / 1
85%
main: 85%

README BADGES
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