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CONDA_PY=3.5 CONDA_NPY=1.11

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Merge pull request #931 from markovmodel/refactor_msm_use_properties

Refactor msm use properties

13840 of 15805 relevant lines covered (87.57%)

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Source Files on job 2326.6 (CONDA_PY=3.5 CONDA_NPY=1.11)