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Ran 02 Jun 2026 03:28AM UTC

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Committed 01 Jun 2026 10:25PM UTC coverage: 80.822%. Remained the same

Job # 26796455446.1

Build Type

push

github

Committed by

cokelaer

Commit Message

Add optional FastQC on raw reads (--do-fastqc); bump to 1.5.0

- new --do-fastqc CLI flag enables FastQC on raw input reads
- fastqc rule + config/schema block, output folded into MultiQC report
- tools.txt, environment.yml, README docs updated
- test_full covers --do-fastqc; new test_standalone_script_fastqc
- README: fix `sh mapper.sh` -> `bash mapper.sh`, drop stale fastqc note

Note: bundles pre-existing uncommitted bwa_split fixes in mapper.rules.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Coverage Stats

59 of 73 relevant lines covered (80.82%)

0.81 hits per line

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main: 81%

README BADGES
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Source Files on job 26796455446.1

cokelaer / mapper / 26796455446 / 1 81% main: 81%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 26796455446.1

cokelaer / mapper / 26796455446 / 1
81%
main: 81%

README BADGES
x