Ran
|
Files
26
|
Run time
4s
|
Badge
README BADGES
|
push
travis-ci
Merge pull request #178 from hammerlab/add-mutation-effect-to-init Add MutationEffect to __init__.py
1182 of 1331 relevant lines covered (88.81%)
0.89 hits per line
Coverage | ∆ | File | Lines | Relevant | Covered | Missed | Hits/Line |
---|---|---|---|---|---|---|---|
61.54 | varcode/effects/transcript_helpers.py | 54 - 10 | 13 - 7 | 8 + 8 | 5 - 15 | 1.0 + 1.0 | |
71.74 | varcode/effects/effect_collection.py | 291 + 93 | 92 + 25 | 66 + 66 | 26 - 41 | 1.0 + 1.0 | |
75.66 | varcode/vcf.py | 477 + 472 | 152 + 151 | 115 + 114 | 37 + 37 | 1.0 | |
80.0 | varcode/nucleotides.py | 98 + 91 | 30 + 30 | 24 + 24 | 6 + 6 | 1.0 + 1.0 | |
83.45 | varcode/effects/effect_prediction.py | 389 + 375 | 139 + 132 | 116 + 112 | 23 + 20 | 1.0 | |
85.0 | varcode/cli/variant_args.py | 139 + 108 | 40 + 40 | 34 + 34 | 6 + 6 | 1.0 + 1.0 | |
87.76 | varcode/maf.py | 158 + 147 | 49 + 49 | 43 + 43 | 6 + 6 | 1.0 + 1.0 | |
88.89 | varcode/effects/common.py | 25 - 23 | 9 - 7 | 8 - 8 | 1 + 1 | 1.0 | |
89.09 | varcode/effects/translate.py | 191 - 123 | 55 - 123 | 49 - 126 | 6 + 3 | 1.0 | |
90.0 | varcode/reference.py | 83 + 72 | 20 + 20 | 18 + 18 | 2 + 2 | 1.0 + 1.0 |