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Consistent Repository connection state tracking and sharing (#9082)

* Add failing repository connection sharing tests

Signed-off-by: Matt Long <ml@medplum.com>

* First pass at extracting RepositorySession

Signed-off-by: Matt Long <ml@medplum.com>

* Simplify constructor and clone

Signed-off-by: Matt Long <ml@medplum.com>

* Add repo.withStatementTimeout

Signed-off-by: Matt Long <ml@medplum.com>

* Simplify seedDatabase

Signed-off-by: Matt Long <ml@medplum.com>

* Add a few more safetely checks

Signed-off-by: Matt Long <ml@medplum.com>

* More precise types for inherited connections

Signed-off-by: Matt Long <ml@medplum.com>

* [autofix.ci] apply automated fixes

* Ensure transaction isolation level compat

Signed-off-by: Matt Long <ml@medplum.com>

* Tighten up transactionDpeth logic

Signed-off-by: Matt Long <ml@medplum.com>

* Clean up RepositoryConnection creation interfaces

Signed-off-by: Matt Long <ml@medplum.com>

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Signed-off-by: Matt Long <ml@medplum.com>
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

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