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Merge origin/copilot/address-architecture-review-point

Split src/index.ts god-file into cohesive modules (architecture
review point 1): docker/, ssh/, port-proxy/, launcher.ts, safety.ts,
in-docker.ts. Also deduplicated parseJsonWithSchema in in-docker.ts.

610 of 775 branches covered (78.71%)

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2712 of 4736 relevant lines covered (57.26%)

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Source Files on job 22253417706.1