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Ran 17 Aug 2016 11:38AM UTC

Files 80

Run time 8s

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Committed 17 Aug 2016 11:21AM UTC coverage: 82.048% (+0.2%) from 81.886%

Job # 1939.1

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Moved mutation counting to var module. (#258)

Moved mutation counting tests.

For now just using all of the Bio.Seq module

Added debug line to var tests

Edited error flagged by tests in is_ambiguous_leinient

Added test for both_purines

Added tests for both_pyrimidines

Added tests for cant_distinguish

Altered function and cant_distinguish method for tstv counting

Edited function signatures

Added isTransversion method

readded is_ambiguous_strict

Added man section for mutation counting.

Added are diffrent method

Added isTransition test

Added isConserved and isConserved test

Changed names from is to are, and added tests for areDifferent

renamed methods to isMutation

Added new count_mutations methods

Added docs

Added tests for count_mutations

Corrected error in counting transitions.

Changes following review comments.

Coverage Stats

4735 of 5771 relevant lines covered (82.05%)

529409.26 hits per line

BioJulia / Bio.jl / 1939 / 1
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master: 64%

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BioJulia / Bio.jl / 1939 / 1 64% master: 64%

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BioJulia / Bio.jl / 1939 / 1
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master: 64%

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